Re: microarray analysis for help!# Biology - 生物学
l*k
1 楼
well, I just read all the replies, seems no one asked you how
many chips you did and what is your exact defination of
down or up regulation, algorithm used, etc.
clustering, in most cases, does not make biological sense at
all. What you can do is to select the list of genes with good
P value and use Affymetrix's website for GO analysis, it is hard
to save results but kinda give you a tree like structure based
on your genes GO identity.
for probe level analysis: Dchip, RMA, MAS5.
For higher level
many chips you did and what is your exact defination of
down or up regulation, algorithm used, etc.
clustering, in most cases, does not make biological sense at
all. What you can do is to select the list of genes with good
P value and use Affymetrix's website for GO analysis, it is hard
to save results but kinda give you a tree like structure based
on your genes GO identity.
for probe level analysis: Dchip, RMA, MAS5.
For higher level