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MSA多序列比对

MSA多序列比对# Biology - 生物学

G*G2014-03-13 07:03

1 楼

I am looking for a multiple sequence alignment tool
which can align multiple sequences with one reference sequence
and then order all the sequences based on the alignment scores.
please recommend one. Thank you.

j*j2014-03-13 07:03

2 楼

Please check the following list:
http://en.wikipedia.org/wiki/List_of_sequence_alignment_softwar
but I think what you want is not MSA tool, but pairwise alignment tool (I
think you want to align all query sequences to one reference sequence and
order them according to the sequence identity?). So you may want to use one
in the pairwise alignment section in the list.

【在 G***G 的大作中提到】

: I am looking for a multiple sequence alignment tool
: which can align multiple sequences with one reference sequence
: and then order all the sequences based on the alignment scores.
: please recommend one. Thank you.

G*G2014-03-13 07:03

3 楼

exactly right.

one

【在 j*********j 的大作中提到】

: Please check the following list:
: http://en.wikipedia.org/wiki/List_of_sequence_alignment_softwar
: but I think what you want is not MSA tool, but pairwise alignment tool (I
: think you want to align all query sequences to one reference sequence and
: order them according to the sequence identity?). So you may want to use one
: in the pairwise alignment section in the list.